bulk-rnaseq
bulk-rnaseq (K-Dense-AI/scientific-agent-skills): Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.
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52k
Votes
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Score
47.2009
Source: K-Dense-AI/scientific-agent-skills · skills/bulk-rnaseq/SKILL.md
npx skills add K-Dense-AI/scientific-agent-skills --skill bulk-rnaseq
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